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254 packages found

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cytoscape

Graph theory (a.k.a. network) library for analysis and visualisation

maxkfranz
published version 3.32.0, 2 months ago345 dependents licensed under $MIT
5,603,297

@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 3 years ago17 dependents licensed under $MIT
27,895

@gmod/bgzf-filehandle

read from a compressed bgzip file (with .gzi) as if it were uncompressed

cmdcolin
published version 4.0.0, a month ago17 dependents licensed under $MIT
17,581

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 6.0.4, a month ago17 dependents licensed under $MIT
12,535

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, a year ago55 dependents licensed under $MIT
9,072

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 3.0.5, a month ago24 dependents licensed under $MIT
6,907

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.7, a month ago3 dependents licensed under $MIT
5,530

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 4.0.6, a month ago15 dependents licensed under $MIT
6,155

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 5.0.5, a month ago0 dependents licensed under $MIT
6,876

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 7.0.5, 15 days ago17 dependents licensed under $MIT
5,980

@gmod/twobit

Read .2bit files in node or webpack

cmdcolin
published version 6.0.1, a month ago10 dependents licensed under $MIT
5,191

sniper

Renders snippets on demand

greenify
published version 0.2.17, 9 years ago3 dependents licensed under $Apache 2
4,557

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.6, a month ago1 dependents licensed under $MIT
4,539

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.9, 3 months ago24 dependents licensed under $MIT
6,579

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.5.1, 20 days ago47 dependents licensed under $Apache-2.0
4,008

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 2.0.12, 15 days ago17 dependents licensed under $MIT
5,318

@gmod/ucsc-hub

Read and write UCSC track and assembly hub files in node or the browser

cmdcolin
published version 2.0.3, 23 days ago3 dependents licensed under $MIT
4,887

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 3.0.1, a month ago21 dependents licensed under $MIT
5,208

bio-pv

WebGL protein viewer

biasmv
published version 1.8.1, 10 years ago5 dependents
3,823

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.5.1, 20 days ago3 dependents licensed under $Apache-2.0
2,816
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