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50 packages found

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@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 3 years ago17 dependents licensed under $MIT
28,118

@gmod/bgzf-filehandle

read from a compressed bgzip file (with .gzi) as if it were uncompressed

cmdcolin
published version 4.0.0, a month ago17 dependents licensed under $MIT
17,236

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 6.0.4, a month ago17 dependents licensed under $MIT
11,526

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.9, 3 months ago24 dependents licensed under $MIT
6,678

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, a year ago55 dependents licensed under $MIT
9,072

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 3.0.1, 2 months ago21 dependents licensed under $MIT
4,939

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.5.1, 24 days ago47 dependents licensed under $Apache-2.0
3,428

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 3.0.5, a month ago24 dependents licensed under $MIT
6,786

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.7, 2 months ago3 dependents licensed under $MIT
5,324

@gmod/twobit

Read .2bit files in node or webpack

cmdcolin
published version 6.0.1, 2 months ago10 dependents licensed under $MIT
4,988

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 7.0.5, 19 days ago17 dependents licensed under $MIT
5,980

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 4.0.6, a month ago15 dependents licensed under $MIT
5,935

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 5.0.5, 2 months ago0 dependents licensed under $MIT
6,663

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.6, 2 months ago1 dependents licensed under $MIT
4,341

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 2.0.12, 19 days ago17 dependents licensed under $MIT
5,318

@gmod/ucsc-hub

Read and write UCSC track and assembly hub files in node or the browser

cmdcolin
published version 2.0.3, a month ago3 dependents licensed under $MIT
4,887

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.5.1, 24 days ago3 dependents licensed under $Apache-2.0
2,616

gtf-nostream

utilities to read GTF data

cmdcolin
published version 1.3.4, 10 months ago1 dependents licensed under $MIT
2,961

@jbrowse/product-core

JBrowse 2 code shared between products but not used by plugins

cmdcolin
published version 3.5.1, 24 days ago11 dependents licensed under $Apache-2.0
2,321

@jbrowse/embedded-core

JBrowse 2 code shared between embedded products

cmdcolin
published version 3.5.1, 24 days ago4 dependents licensed under $Apache-2.0
1,974
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