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111 packages found

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igv

Embeddable genomic visualization component based on the Integrative Genomics Viewer

igvteam
published version 3.4.1, 11 hours ago12 dependents licensed under $MIT
32,841

@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 3 years ago18 dependents licensed under $MIT
27,693

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, a year ago31 dependents licensed under $MIT
8,543

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 6.0.4, a month ago17 dependents licensed under $MIT
8,557

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.9, 3 months ago22 dependents licensed under $MIT
4,427

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 3.0.5, a month ago24 dependents licensed under $MIT
4,717

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 7.0.5, a month ago17 dependents licensed under $MIT
4,127

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 4.0.6, a month ago11 dependents licensed under $MIT
3,681

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.5.1, a month ago47 dependents licensed under $Apache-2.0
3,401

higlass

HiGlass Hi-C / genomic / large data viewer

pkerpedjiev
published version 2.0.0, 16 days ago18 dependents licensed under $MIT
4,117

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 5.0.5, 2 months ago1 dependents licensed under $MIT
4,307

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 3.0.1, 2 months ago4 dependents licensed under $MIT
2,720

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.7, 2 months ago4 dependents licensed under $MIT
3,360

ideogram

Chromosome visualization for the web

eweitz
published version 1.53.0, 2 months ago4 dependents licensed under $CC0-1.0
3,022

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.5.1, a month ago3 dependents licensed under $Apache-2.0
2,770

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 2.0.12, a month ago17 dependents licensed under $MIT
2,812

@jbrowse/product-core

JBrowse 2 code shared between products but not used by plugins

cmdcolin
published version 3.5.1, a month ago11 dependents licensed under $Apache-2.0
2,427

@gmod/ucsc-hub

Read and write UCSC track and assembly hub files in node or the browser

cmdcolin
published version 2.0.3, a month ago2 dependents licensed under $MIT
2,407

@jbrowse/embedded-core

JBrowse 2 code shared between embedded products

cmdcolin
published version 3.5.1, a month ago4 dependents licensed under $Apache-2.0
2,157

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.6, 2 months ago1 dependents licensed under $MIT
2,091
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